Items where Subject is "Transcription"

A

Ayer, D E and Kretzner, L and Eisenman, R N (1993) Mad: a heterodimeric partner for Max that antagonizes Myc transcriptional activity. Cell, 72 (2). pp. 211-222. ISSN 0092-8674

Ayer, D E and Laherty, C D and Lawrence, Q A and Armstrong, A P and Eisenman, R N (1996) Mad proteins contain a dominant transcription repression domain. Molecular and cellular biology, 16 (10). pp. 5772-5781. ISSN 0270-7306

Ayer, D E and Lawrence, Q A and Eisenman, R N (1995) Mad-Max transcriptional repression is mediated by ternary complex formation with mammalian homologs of yeast repressor Sin3. Cell, 80 (5). pp. 767-776. ISSN 0092-8674

B

Bailey, S Lawrence and Gurley, Kay E and Hoon-Kim, Kyung and Kelly-Spratt, Karen S and Kemp, Christopher J (2008) Tumor suppression by p53 in the absence of Atm. Molecular cancer research : MCR, 6 (7). pp. 1185-1192. ISSN 1541-7786

Banker, D E and Bigler, J and Eisenman, R N (1991) The thyroid hormone receptor gene (c-erbA alpha) is expressed in advance of thyroid gland maturation during the early embryonic development of Xenopus laevis. Molecular and cellular biology, 11 (10). pp. 5079-5089. ISSN 0270-7306

Banker, D E and Eisenman, R N (1993) Thyroid hormone receptor can modulate retinoic acid-mediated axis formation in frog embryogenesis. Molecular and cellular biology, 13 (12). pp. 7540-7552. ISSN 0270-7306

Bigler, J and Hokanson, W and Eisenman, R N (1992) Thyroid hormone receptor transcriptional activity is potentially autoregulated by truncated forms of the receptor. Molecular and cellular biology, 12 (5). pp. 2406-2417. ISSN 0270-7306

Brooks, Alison (2011) Integration of nutritional status with germline proliferation: characterizing the roles of NHR-88 and NHR-49 in the C. elegans gonad. PhD thesis, Fred Hutchinson Cancer Research Center / University of Washington.

C

Chen, Hung-Ta and Warfield, Linda and Hahn, Steven (2007) The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex. Nature structural & molecular biology, 14 (8). pp. 696-703. ISSN 1545-9993

Cleveland, J L and Huleihel, M and Bressler, P and Siebenlist, U and Akiyama, L and Eisenman, R N and Rapp, U R (1988) Negative regulation of c-myc transcription involves myc family proteins. Oncogene research, 3 (4). pp. 357-375. ISSN 0890-6467

Coller, H A and Grandori, C and Tamayo, P and Colbert, T and Lander, E S and Eisenman, R N and Golub, T R (2000) Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signaling, and adhesion. Proceedings of the National Academy of Sciences of the United States of America, 97 (7). pp. 3260-3265. ISSN 0027-8424

Conant, Clarke R and Van Gilst, Marc R and Weitzel, Stephen E and Rees, William A and von Hippel, Peter H (2005) A quantitative description of the binding states and in vitro function of antitermination protein N of bacteriophage lambda. Journal of molecular biology, 348 (5). pp. 1039-1057. ISSN 0022-2836

Conklin, K F and Coffin, J M and Robinson, H L and Groudine, M and Eisenman, R N (1982) Role of methylation in the induced and spontaneous expression of the avian endogenous virus ev-1: DNA structure and gene products. Molecular and cellular biology, 2 (6). pp. 638-652. ISSN 0270-7306

Cowley, Shaun M and Kang, Richard S and Frangioni, John V and Yada, Jason J and DeGrand, Alec M and Radhakrishnan, Ishwar and Eisenman, Robert N (2004) Functional analysis of the Mad1-mSin3A repressor-corepressor interaction reveals determinants of specificity, affinity, and transcriptional response. Molecular and cellular biology, 24 (7). pp. 2698-2709. ISSN 0270-7306

G

Gallant, P and Shiio, Y and Cheng, P F and Parkhurst, S M and Eisenman, R N (1996) Myc and Max homologs in Drosophila. Science (New York, N.Y.), 274 (5292). pp. 1523-1527. ISSN 0036-8075

Glover, Cynthia E. and Gurley, Kay E. and Kim, Kyung-Hoon and Storer, Barry and Fero, Mathew L. and Kemp, Christopher J. (2009) Endocrine dysfunction in p27Kip1 deficient mice and susceptibility to Wnt-1 driven breast cancer. Carcinogenesis, 30 (6). pp. 1058-1063. ISSN 1460-2180

Gomez-Roman, Natividad and Grandori, Carla and Eisenman, Robert N and White, Robert J (2003) Direct activation of RNA polymerase III transcription by c-Myc. Nature, 421 (6920). pp. 290-294. ISSN 0028-0836

Grandori, C and Mac, J and Siëbelt, F and Ayer, D E and Eisenman, R N (1996) Myc-Max heterodimers activate a DEAD box gene and interact with multiple E box-related sites in vivo. The EMBO journal, 15 (16). pp. 4344-4357. ISSN 0261-4189

Grandori, Carla and Gomez-Roman, Natividad and Felton-Edkins, Zoe A and Ngouenet, Celine and Galloway, Denise A and Eisenman, Robert N and White, Robert J (2005) c-Myc binds to human ribosomal DNA and stimulates transcription of rRNA genes by RNA polymerase I. Nature cell biology, 7 (3). pp. 311-318. ISSN 1465-7392

Graves, B J and Eisenman, R N and McKnight, S L (1985) Delineation of transcriptional control signals within the Moloney murine sarcoma virus long terminal repeat. Molecular and cellular biology, 5 (8). pp. 1948-1958. ISSN 0270-7306

Grewal, Savraj S and Li, Ling and Orian, Amir and Eisenman, Robert N and Edgar, Bruce A (2005) Myc-dependent regulation of ribosomal RNA synthesis during Drosophila development. Nature cell biology, 7 (3). pp. 295-302. ISSN 1465-7392

H

Hann, S R and Eisenman, R N (1984) Proteins encoded by the human c-myc oncogene: differential expression in neoplastic cells. Molecular and cellular biology, 4 (11). pp. 2486-2497. ISSN 0270-7306

Heinzel, T and Lavinsky, R M and Mullen, T M and Söderstrom, M and Laherty, C D and Torchia, J and Yang, W M and Brard, G and Ngo, S D and Davie, J R and Seto, E and Eisenman, R N and Rose, D W and Glass, C K and Rosenfeld, M G (1997) A complex containing N-CoR, mSin3 and histone deacetylase mediates transcriptional repression. Nature, 387 (6628). pp. 43-48. ISSN 0028-0836

Hook, Sara S and Orian, Amir and Cowley, Shaun M and Eisenman, Robert N (2002) Histone deacetylase 6 binds polyubiquitin through its zinc finger (PAZ domain) and copurifies with deubiquitinating enzymes. Proceedings of the National Academy of Sciences of the United States of America, 99 (21). pp. 13425-13430. ISSN 0027-8424

Hurlin, P J and Quéva, C and Koskinen, P J and Steingrímsson, E and Ayer, D E and Copeland, N G and Jenkins, N A and Eisenman, R N (1995) Mad3 and Mad4: novel Max-interacting transcriptional repressors that suppress c-myc dependent transformation and are expressed during neural and epidermal differentiation. The EMBO journal, 14 (22). pp. 5646-5659. ISSN 0261-4189

J

Julius, M A and Street, A J and Fahrlander, P D and Yang, J Q and Eisenman, R N and Marcu, K B (1988) Translocated c-myc genes produce chimeric transcripts containing antisense sequences of the immunoglobulin heavy chain locus in mouse plasmacytomas. Oncogene, 2 (5). pp. 469-476. ISSN 0950-9232

K

Kelly-Spratt, K.S. and Philipp-Staheli, J. and Gurley, K.E. and Hoon-Kim, K. and Knoblaugh, S. and Kemp, C.J. (2009) Inhibition of PI-3K restores nuclear p27(Kip1) expression in a mouse model of Kras-driven lung cancer. Oncogene, 28 (41). pp. 3652-3662. ISSN 1476-5594

King, M W and Roberts, J M and Eisenman, R N (1986) Expression of the c-myc proto-oncogene during development of Xenopus laevis. Molecular and cellular biology, 6 (12). pp. 4499-4508. ISSN 0270-7306

Knoepfler, P S and Eisenman, R N (1999) Sin meets NuRD and other tails of repression. Cell, 99 (5). pp. 447-450. ISSN 0092-8674

Kretzner, L and Blackwood, E M and Eisenman, R N (1992) Myc and Max proteins possess distinct transcriptional activities. Nature, 359 (6394). pp. 426-429. ISSN 0028-0836

L

Laherty, C D and Billin, A N and Lavinsky, R M and Yochum, G S and Bush, A C and Sun, J M and Mullen, T M and Davie, J R and Rose, D W and Glass, C K and Rosenfeld, M G and Ayer, D E and Eisenman, R N (1998) SAP30, a component of the mSin3 corepressor complex involved in N-CoR-mediated repression by specific transcription factors. Molecular cell, 2 (1). pp. 33-42. ISSN 1097-2765

Laherty, C D and Yang, W M and Sun, J M and Davie, J R and Seto, E and Eisenman, R N (1997) Histone deacetylases associated with the mSin3 corepressor mediate mad transcriptional repression. Cell, 89 (3). pp. 349-356. ISSN 0092-8674

Lohavanichbutr, Pawadee and Houck, John and Fan, Wenhong and Yueh, Bevan and Mendez, Eduardo and Futran, Neal and Doody, David R and Upton, Melissa P and Farwell, D Gregory and Schwartz, Stephen M and Zhao, Lue Ping and Chen, Chu (2009) Genomewide gene expression profiles of HPV-positive and HPV-negative oropharyngeal cancer: potential implications for treatment choices. Archives of otolaryngology--head & neck surgery, 135 (2). pp. 180-188. ISSN 1538-361X

M

MacQuarrie, Kyle (2011) Investigating the Failure of Myogenesis in the Pediatric Tumor Rhabdomyosarcoma. PhD thesis, Fred Hutchinson Cancer Research Center / University of Washington.

Miller, Gail and Hahn, Steven (2006) A DNA-tethered cleavage probe reveals the path for promoter DNA in the yeast preinitiation complex. Nature structural & molecular biology, 13 (7). pp. 603-610. ISSN 1545-9993

N

Nan, X and Ng, H H and Johnson, C A and Laherty, C D and Turner, B M and Eisenman, R N and Bird, A (1998) Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. Nature, 393 (6683). pp. 386-389. ISSN 0028-0836

O

Orian, A and Grewal, S S and Knoepfler, P S and Edgar, B A and Parkhurst, S M and Eisenman, R N (2005) Genomic binding and transcriptional regulation by the Drosophila Myc and Mnt transcription factors. Cold Spring Harbor symposia on quantitative biology, 70. pp. 299-307. ISSN 0091-7451

Oron, Assaf P. and Jiang, Zhen and Gentleman, Robert (2008) Gene Set Enrichment Analysis using Linear Models and Diagnostics. Bioinformatics, 24 (22). pp. 2586-2591. ISSN 1460-2059 (In Press)

P

Pachl, C and Schubach, W and Eisenman, R N and Linial, M (1983) Expression of c-myc RNA in bursal lymphoma cell lines: identification of c-myc-encoded proteins by hybrid-selected translation. Cell, 33 (2). pp. 335-344. ISSN 0092-8674

Pathare, Pranali (2011) The role of C. elegans NHR-49 in regulating global lipid homeostasis. PhD thesis, University of Washington / Fred Hutchinson Cancer Research Center.

Peichel, Catherine L and Prabhakaran, B and Vogt, T F (1997) The mouse Ulnaless mutation deregulates posterior HoxD gene expression and alters appendicular patterning. Development (Cambridge, England), 124 (18). pp. 3481-3492. ISSN 0950-1991

Ptashne, Mark and Gill, Grace and Brent, Roger (2003) Modularity of eukaryotic transcription activators. Ergito - Great Experiments.

Q

Quéva, C and Hurlin, P J and Foley, K P and Eisenman, R N (1998) Sequential expression of the MAD family of transcriptional repressors during differentiation and development. Oncogene, 16 (8). pp. 967-977. ISSN 0950-9232

S

Shiio, Yuzuru and Eisenman, Robert N (2003) Histone sumoylation is associated with transcriptional repression. Proceedings of the National Academy of Sciences of the United States of America, 100 (23). pp. 13225-13230. ISSN 0027-8424

Shiio, Yuzuru and Rose, David W and Aur, Radin and Donohoe, Sam and Aebersold, Ruedi and Eisenman, Robert N (2006) Identification and characterization of SAP25, a novel component of the mSin3 corepressor complex. Molecular and cellular biology, 26 (4). pp. 1386-1397. ISSN 0270-7306

Shostak, Yuriy and Van Gilst, Marc R and Antebi, Adam and Yamamoto, Keith R (2004) Identification of C. elegans DAF-12-binding sites, response elements, and target genes. Genes & development, 18 (20). pp. 2529-2544. ISSN 0890-9369

Spitz, F and Gonzalez, F and Peichel, Catherine L and Vogt, T F and Duboule, D and Zákány, J (2001) Large scale transgenic and cluster deletion analysis of the HoxD complex separate an ancestral regulatory module from evolutionary innovations. Genes & development, 15 (17). pp. 2209-2214. ISSN 0890-9369

Stirewalt, Derek L and Meshinchi, Soheil and Kopecky, Kenneth J and Fan, Wenhong and Pogosova-Agadjanyan, Era L and Engel, Julia H and Cronk, Michelle R and Dorcy, Kathleen Shannon and McQuary, Amy R and Hockenbery, David and Wood, Brent and Heimfeld, Shelly and Radich, Jerald P (2008) Identification of genes with abnormal expression changes in acute myeloid leukemia. Genes, chromosomes & cancer, 47 (1). pp. 8-20. ISSN 1045-2257

Stirewalt, Derek L and Mhyre, Andrew J and Marcondes, Mario and Pogosova-Agadjanyan, Era and Abbasi, Nissa and Radich, Jerald P and Deeg, H Joachim (2008) Tumour necrosis factor-induced gene expression in human marrow stroma: clues to the pathophysiology of MDS? British journal of haematology, 140 (4). pp. 444-453. ISSN 1365-2141

Swanson, Kurt A and Knoepfler, Paul S and Huang, Kai and Kang, Richard S and Cowley, Shaun M and Laherty, Carol D and Eisenman, Robert N and Radhakrishnan, Ishwar (2004) HBP1 and Mad1 repressors bind the Sin3 corepressor PAH2 domain with opposite helical orientations. Nature structural & molecular biology, 11 (8). pp. 738-746. ISSN 1545-9993

T

Taubert, Stefan and Hansen, Malene and Van Gilst, Marc R and Cooper, Samantha B and Yamamoto, Keith R (2008) The Mediator subunit MDT-15 confers metabolic adaptation to ingested material. PLoS genetics, 4 (2). e1000021. ISSN 1553-7404

Taubert, Stefan and Van Gilst, Marc R and Hansen, Malene and Yamamoto, Keith R (2006) A Mediator subunit, MDT-15, integrates regulation of fatty acid metabolism by NHR-49-dependent and -independent pathways in C. elegans. Genes & development, 20 (9). pp. 1137-1149. ISSN 0890-9369

Tsukiyama, Toshio and Parkhurst, Susan M (2006) Chromosomes and Expression Mechanisms. Current Opinion in Genetics & Development, 16 (2). pp. 101-103. ISSN 0959-437X

U

Uz, Elif and Loubiere, Laurence S and Gadi, Vijayakrishna K and Ozbalkan, Zeynep and Stewart, Jeffrey and Nelson, J Lee and Ozcelik, Tayfun (2008) Skewed X-chromosome inactivation in scleroderma. Clinical reviews in allergy & immunology, 34 (3). pp. 352-355. ISSN 1080-0549

V

Van Gilst, M R and von Hippel, P H (1997) Assembly of the N-dependent antitermination complex of phage lambda: NusA and RNA bind independently to different unfolded domains of the N protein. Journal of molecular biology, 274 (2). pp. 160-173. ISSN 0022-2836

Van Gilst, M R and von Hippel, P H (2000) Quantitative dissection of transcriptional control system: N-dependent antitermination complex of phage lambda as regulatory paradigm. Methods in enzymology, 323. pp. 1-31. ISSN 0076-6879

Van Gilst, Marc R and Hadjivassiliou, Haralambos and Jolly, Amber and Yamamoto, Keith R (2005) Nuclear hormone receptor NHR-49 controls fat consumption and fatty acid composition in C. elegans. PLoS biology, 3 (2). e53. ISSN 1545-7885

Van Gilst, Marc R and Hadjivassiliou, Haralambos and Yamamoto, Keith R (2005) A Caenorhabditis elegans nutrient response system partially dependent on nuclear receptor NHR-49. Proceedings of the National Academy of Sciences of the United States of America, 102 (38). pp. 13496-13501. ISSN 0027-8424